Dr.rer.nat.ARLI ADITYA PARIKESIT
HEAD OF BIOINFORMATICS

Dr.rer.nat Arli Aditya Parikesit is the head of bioinformatics department at i3L. He finished his bachelor and master both in Chemistry, University of Indonesia. In order to pursue the degree in Bioinformatics, he accepted DAAD (German Academic Exchange Service) fellow to conduct doctorate research at Bioinformatics Group, Faculty of Informatics and Mathematics, University of Leipzig, Germany. His doctoral research is focused on the utilization of modern protein domain annotation techniques to the three domains of life. In addition, Dr. Arli is also an expert on immunoinformatics, in silico drug design, and in silico transcriptomics.

RESEARCHES AND PROJECTS

  • Text Mining of Life Science Articles
  • Mapping of Indonesian Biodiversity
  • Transcriptomics-based drug design
  • Deep Phylogeny methods

Selected Publications

  • Parikesit, A. A., Ardiansah, B., Handayani, D. M., Tambunan, U. S. F., & Kerami, D. (2016). Virtual screening of Indonesian flavonoid as neuraminidase inhibitor of influenza a subtype H5N1. IOP Conference Series: Materials Science and Engineering, 107(1), 12053. https://doi.org/10.1088/1757-899X/107/1/012053
  • Zahrah, H., Tambunan, U., Ma’rup, A., & Parikesit, A. (2016). Immunoinformatics Approach in Designing Epitope-based Vaccine Against Meningitis-inducing Bacteria (Streptococcus pneumoniae, Neisseria meningitidis, and Haemophilus influenzae Type b). Drug Target Insights, 19. https://doi.org/10.4137/DTI.S38458
  • Parikesit, A. A., Steiner, L., Stadler, P. F., & Prohaska, S. J. (2014). Pitfalls of Ascertainment Biases in Genome Annotations—Computing Comparable Protein Domain Distributions in Eukarya. Malaysian Journal of Fundamental and Applied Sciences, 10(2), 65–75. https://doi.org/10.11113/mjfas.v10n2.57
  • Parikesit, A. ., K, K., & Tambunan, U. S. F. (2013). Screening of Commercial Cyclic Peptides as Inhibitor Envelope Protein Dengue Virus (DENV) Through Molecular Docking and Molecular Dynamics. Pakistan Journal of Biological Sciences, 16(24), 1836–1848. https://doi.org/10.3923/pjbs.2013.1836.1848
  • Parikesit, A. A., Stadler, P. F., & Prohaska, S. J. (2011). Evolution and Quantitative Comparison of Genome-Wide Protein Domain Distributions. Genes, 2(4), 912–924. https://doi.org/10.3390/genes2040912
  • Parikesit, A. A., Stadler, P. F., & Prohaska, S. J. (2010). Quantitative comparison of genomic-wide protein domain distributions. In Ger. Conf. Bioinform., P-173 (pp. 93–102). Bonn: Gesellschaft für Informatik. https://doi.org/10.13140/2.1.2036.2248